Basal |
Bin-level and region-level data from basal mouse brain samples |
CallCandidates |
Call candidate m6A regions or candidate differential m6A regions. |
CallPeaks.multiRep |
m6A peak calling with multiple replicates. |
CallPeaks.oneRep |
m6A peak calling with only one replicate. |
CallPeaks.paramEsti |
Parameter estimation in m6A peak calling with multiple replicates. |
DivideBins |
Obtain genomic bins and bin-level read counts from BAM files. |
EstiMu |
Estimation of m6A methylation. |
EstiPhi |
Dispersion estimation. |
findBumps |
Bump-finding from transcriptome bins. |
ShowOnePeak |
Visulization of a single peak along the genome. |
TRESS_peak |
Detecting m6A methylation regions from Methylated RNA Immunoprecipitation Sequencing. |