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| addCoordinates | Add coordinates to Object Adds output of Spot Detector coordinates to Seurat object or SCE object created by createSeurat/createSCE. Details about how to use Spot Detector can be found: https://github.com/SpatialTranscriptomicsResearch/st_spot_detector |
| createSCE | Create a SingleCellExperiment Object From Spatial Transcriptomics Data |
| createSeurat | Create a Seurat Object From Spatial Transcriptomics Data |
| createVisiumSCE | createVisiumSCE |
| markClusterCol | markClusterCol |
| parseImage | This function parses a HE image to use as the background for plots |
| removeSpots | removeSpots |
| runShinySpaniel | RunShinySpaniel |
| selectSpots | selectSpots |
| spanielPlot | Spatial Transcriptomics Plot |