Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations

[Up] [Top]

Documentation for package ‘SPIA’ version 2.45.0

Help Pages

ALL_Colorectal Results from a microarray experiment comparing colorectal cancer samples and normal tissue samples.
ALL_Vessels Results from a microarray expriment comparing umbilical veins and arteries tissues
colorectalcancer Results from a microarray experiment comparing colorectal cancer samples and normal tissue samples.
combfunc Combining two p-values using Fisher's product or normal inversion method
DE_Colorectal Results from a microarray experiment comparing colorectal cancer samples and normal tissue samples.
DE_Vessels Results from a microarray expriment comparing umbilical veins and arteries tissues
makeSPIAdata Process KGML files for spia analysis
plotP SPIA two-way evidence plot
spia Signaling Pathway Impact Analysis (SPIA) based on over-representation and signaling perturbations accumulation
top Results from a microarray experiment comparing colorectal cancer samples and normal tissue samples.
Vessels Results from a microarray expriment comparing umbilical veins and arteries tissues