SCATE: Single-cell ATAC-seq Signal Extraction and Enhancement

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Documentation for package ‘SCATE’ version 1.3.0

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cellcluster Cell clustering
extractfeature Extract features for certain genomic regions
makedatabase Make customized database
peakcall Peak calling
satacprocess Preprocess scATAC-seq
SCATE Perform SCATE
SCATEpipeline SCATE Pipeline