OVESEG-test to detect tissue/cell-specific markers


[Up] [Top]

Documentation for package ‘OVESEG’ version 1.9.0

Help Pages

OVESEG-package OVESEG: A package for marker gene test.
countBT RNAseq count data downsampled from GSE60424
nullDistri Probability of one group being upregulated under null
OVESEG OVESEG: A package for marker gene test.
OVESEGtest OVESEG-test
OVESEGtstat OVESEG-test statistics
OVEtstatPermTopM OVESEG-test statistics after permuting top M groups
patternDistri Probabilities of all upregulation patterns
postProbNull Posterior probabilities of each component null hypothesis
pvalueWeightedEst p-value by weighted permutation scheme
RocheBT mRNA expression data downsampled from GSE28490 (Roche)