MicrobiomeProfiler-package |
Functional enrichment analysis for microbiome data |
bitr_smpdb |
convert metabolite IDs |
enrichCOG |
COG enrichment analysis for microbiome data |
enrichHMDB |
Metabolism enrichment analysis for microbiome data |
enrichKO |
KO enrichment for microbiome data |
enrichMBKEGG |
Metabolism enrichment analysis for microbiome data |
enrichMDA |
Microbe-Disease associations enrichment analysis |
enrichSMPDB |
Metabolism enrichment analysis for microbiome data |
MicrobiomeProfiler |
Functional enrichment analysis for microbiome data |
microbiota_data |
Example data: a vector of 54 bacterial genera tested for significantly between T2D metformin samples |
microbiota_taxlist |
Example data: a vector of 54 bacterial genera tested for significantly between T2D metformin samples |
Psoriasis_data |
Example data: a vector of 134 significantly different functional COGs between Psoriasis patients and controls |
Rat_data |
Example data: a vector of 91 KEGG Orthologies (KOs) showing significant associations with weaning weight |
run_MicrobiomeProfiler |
Run the Shiny Application |