Detection of de novo deletion in targeted sequencing trios

Documentation for package ‘MDTS’ version 1.13.0

MDTS-package	The MDTS package for Detection of Denovo Deletions from Targeted Sequencing Data Using Minimum-Distance
calcBins	Sample driven calculation of bins for counting
calcCounts	Creating the raw count matrix
calcMD	Calculating the Minimum Distance matrix
denovoDeletions	Denovo Deletion Calling
getMetaData	Constructor for metadata
MDTS	The MDTS package for Detection of Denovo Deletions from Targeted Sequencing Data Using Minimum-Distance
normalizeCounts	Calculating the normalized M scores
segmentMD	Circular Binary Segmentation on Minimum Distances
visualizeDeletion	Visualization for deletions