Nearest Neighbor Detection for Bioconductor Packages

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Documentation for package ‘BiocNeighbors’ version 1.11.0

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A B D E F H K Q R S V misc

BiocNeighbors-package BiocNeighbors: Nearest Neighbor Detection for Bioconductor Packages

-- A --

AnnoyIndex The AnnoyIndex class
AnnoyIndex-class The AnnoyIndex class
AnnoyIndex_path The AnnoyIndex class
AnnoyIndex_search_mult The AnnoyIndex class
AnnoyParam The AnnoyParam class
AnnoyParam-class The AnnoyParam class
AnnoyParam_directory The AnnoyParam class
AnnoyParam_ntrees The AnnoyParam class
AnnoyParam_search_mult The AnnoyParam class

-- B --

BiocNeighborIndex The BiocNeighborIndex class
BiocNeighborIndex-class The BiocNeighborIndex class
BiocNeighborParam The BiocNeighborParam class
BiocNeighborParam-class The BiocNeighborParam class
BiocNeighbors BiocNeighbors: Nearest Neighbor Detection for Bioconductor Packages
BiocNeighbors-algorithms Neighbor search algorithms
BiocNeighbors-raw-index Reporting raw indices
BiocNeighbors-ties Handling tied distances
bndata The BiocNeighborIndex class
bndata-method The BiocNeighborIndex class
bndistance The BiocNeighborIndex class
bndistance-method The BiocNeighborIndex class
bndistance-method The BiocNeighborParam class
bnorder The BiocNeighborIndex class
bnorder-method The AnnoyIndex class
bnorder-method The ExhaustiveIndex class
bnorder-method The HnswIndex class
bnorder-method The KmknnIndex class
bnorder-method The VptreeIndex class
buildAnnoy Build an Annoy index
buildExhaustive Prepare data for an exhaustive search
buildHnsw Build a HNSW index
buildIndex Build a nearest-neighbor index
buildIndex-method Build a nearest-neighbor index
buildKmknn Pre-cluster points with k-means
buildVptree Build a VP tree

-- D --

dim-method The BiocNeighborIndex class
dimnames-method The BiocNeighborIndex class

-- E --

ExhaustiveIndex The ExhaustiveIndex class
ExhaustiveIndex-class The ExhaustiveIndex class
ExhaustiveParam The ExhaustiveParam class
ExhaustiveParam-class The ExhaustiveParam class

-- F --

findAnnoy Find nearest neighbors
findExhaustive Find nearest neighbors
findHnsw Find nearest neighbors
findKmknn Find nearest neighbors
findKNN Find k-nearest neighbors
findKNN-functions Find nearest neighbors
findKNN-method Find k-nearest neighbors
findKNN-methods Find k-nearest neighbors
findMutualNN Find mutual nearest neighbors
findNeighbors Find all neighbors in range
findNeighbors-functions Find all neighbors in range
findNeighbors-method Find all neighbors in range
findNeighbors-methods Find all neighbors in range
findVptree Find nearest neighbors

-- H --

HnswIndex The HnswIndex class
HnswIndex-class The HnswIndex class
HnswIndex_ef_search The HnswIndex class
HnswIndex_path The HnswIndex class
HnswParam The HnswParam class
HnswParam-class The HnswParam class
HnswParam_directory The HnswParam class
HnswParam_ef_construction The HnswParam class
HnswParam_ef_search The HnswParam class
HnswParam_nlinks The HnswParam class

-- K --

KmknnIndex The KmknnIndex class
KmknnIndex-class The KmknnIndex class
KmknnIndex_cluster_centers The KmknnIndex class
KmknnIndex_cluster_info The KmknnIndex class
KmknnParam The KmknnParam class
KmknnParam-class The KmknnParam class
KmknnParam_kmeans_args The KmknnParam class

-- Q --

queryAnnoy Query nearest neighbors
queryExhaustive Query nearest neighbors
queryHnsw Query nearest neighbors
queryKmknn Query nearest neighbors
queryKNN Query k-nearest neighbors
queryKNN-functions Query nearest neighbors
queryKNN-method Query k-nearest neighbors
queryKNN-methods Query k-nearest neighbors
queryNeighbors Query all neighbors
queryNeighbors-functions Query neighbors in range
queryNeighbors-method Query all neighbors
queryNeighbors-methods Query all neighbors
queryVptree Query nearest neighbors

-- R --

rangeFindExhaustive Find all neighbors in range
rangeFindKmknn Find all neighbors in range
rangeFindVptree Find all neighbors in range
rangeQueryExhaustive Query neighbors in range
rangeQueryKmknn Query neighbors in range
rangeQueryVptree Query neighbors in range

-- S --

show-method The AnnoyIndex class
show-method The AnnoyParam class
show-method The BiocNeighborIndex class
show-method The BiocNeighborParam class
show-method The HnswIndex class
show-method The HnswParam class
show-method The KmknnIndex class
show-method The KmknnParam class

-- V --

VptreeIndex The VptreeIndex class
VptreeIndex-class The VptreeIndex class
VptreeIndex_nodes The VptreeIndex class
VptreeParam The VptreeParam class
VptreeParam-class The VptreeParam class

-- misc --

[[-method The AnnoyParam class
[[-method The BiocNeighborIndex class
[[-method The BiocNeighborParam class
[[-method The HnswParam class
[[<--method The AnnoyParam class
[[<--method The BiocNeighborParam class
[[<--method The HnswParam class