## ----eval=FALSE--------------------------------------------------------------- # if (!requireNamespace("BiocManager", quietly = TRUE)) # install.packages("BiocManager") # BiocManager::install("SingleCellMultiModal") ## ----include=TRUE,results="hide",message=FALSE,warning=FALSE------------------ library(SingleCellMultiModal) library(MultiAssayExperiment) ## ----------------------------------------------------------------------------- SCoPE2("macrophage_differentiation", mode = "*", version = "1.0.0", dry.run = TRUE) ## ----------------------------------------------------------------------------- SCoPE2("macrophage_differentiation") ## ----message=FALSE------------------------------------------------------------ scope2 <- SCoPE2("macrophage_differentiation", modes = "rna|protein", dry.run = FALSE) scope2 ## ----------------------------------------------------------------------------- colData(scope2) ## ----------------------------------------------------------------------------- scope2[["rna"]] ## ----------------------------------------------------------------------------- assay(scope2[["rna"]])[1:5, 1:5] ## ----------------------------------------------------------------------------- scope2[["protein"]] ## ----------------------------------------------------------------------------- assay(scope2[["protein"]])[1:5, 1:5] ## ----------------------------------------------------------------------------- sessionInfo()