tartare

DOI: 10.18129/B9.bioc.tartare    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see tartare.

Raw ground spectra recorded on Thermo Fisher Scientific mass spectrometers

Bioconductor version: 3.13

Provides raw files recorded on different Liquid Chromatography Mass Spectrometry (LC-MS) instruments. All included MS instruments are manufactured by Thermo Fisher Scientific and belong to the Orbitrap Tribrid or Q Exactive Orbitrap family of instruments. Despite their common origin and shared hardware components ,e.g., Orbitrap mass analyser, the above instruments tend to write data in different "dialects" in a shared binary file format (.raw). The intention behind tartare is to provide complex but slim real-world files that can be used to make code robust with respect to this diversity. In other words, it is intended for enhanced unit testing. The package is considered to be used with the rawDiag package (Trachsel, 2018 ) and the Spectra MsBackends.

Author: Christian Panse [aut, cre] , Tobias Kockmann [aut]

Maintainer: Christian Panse <cp at fgcz.ethz.ch>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tartare")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tartare")

 

HTML	R Script	make and use tartare data
PDF		Reference Manual

Details

biocViews	ExperimentData, ExperimentHub, MassSpectrometryData
Version	1.6.0
License	GPL-3
Depends	R (>= 3.6), AnnotationHub(>= 2.16), ExperimentHub(>= 1.0)
Imports	utils
LinkingTo
Suggests	BiocStyle, knitr, testthat, tools
SystemRequirements
Enhances
URL	https://github.com/cpanse/tartare
BugReports	https://github.com/cpanse/tartare/issues
Depends On Me
Imports Me
Suggests Me	rawrr
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tartare_1.6.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/tartare
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tartare
Package Short Url	https://bioconductor.org/packages/tartare/
Package Downloads Report	Download Stats