minionSummaryData

DOI: 10.18129/B9.bioc.minionSummaryData    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see minionSummaryData.

Summarised MinION sequencing data published by Ashton et al. 2015

Bioconductor version: 3.13

Summarised MinION sequencing data for Salmonella Typhi published by Ashton et al. in 2015. Three replicate runs are each provided as Fast5Summary objects.

Author: Mike Smith [aut, cre]

Maintainer: Mike Smith <grimbough at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("minionSummaryData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("minionSummaryData")

 

HTML	R Script	Creating example MinION summary dataset
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData, SequencingData
Version	1.22.0
License	MIT + file LICENSE
Depends	R (>= 3.2.0)
Imports
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	IONiseR
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	minionSummaryData_1.22.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/minionSummaryData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/minionSummaryData
Package Short Url	https://bioconductor.org/packages/minionSummaryData/
Package Downloads Report	Download Stats