gpaExample

DOI: 10.18129/B9.bioc.gpaExample    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see gpaExample.

Example data for the GPA package (Genetic analysis incorporating Pleiotropy and Annotation)

Bioconductor version: 3.13

Example data for the GPA package, consisting of the p-values of 1,219,805 SNPs for five psychiatric disorder GWAS from the psychiatric GWAS consortium (PGC), with the annotation data using genes preferentially expressed in the central nervous system (CNS).

Author: Dongjun Chung, Carter Allen

Maintainer: Dongjun Chung <dongjun.chung at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gpaExample")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	ExperimentData, Homo_sapiens_Data, SNPData
Version	1.4.0
License	GPL (>= 2)
Depends	R (>= 4.0.0)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://dongjunchung.github.io/GPA/
Depends On Me
Imports Me
Suggests Me	GPA
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gpaExample_1.4.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/gpaExample
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gpaExample
Package Short Url	https://bioconductor.org/packages/gpaExample/
Package Downloads Report	Download Stats