MouseThymusAgeing

DOI: 10.18129/B9.bioc.MouseThymusAgeing    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see MouseThymusAgeing.

Single-cell Transcriptomics Data of the Ageing Mouse Thymus

Bioconductor version: 3.13

This package provides data access to counts matrices and meta-data for single-cell RNA sequencing data of thymic epithlial cells across mouse ageing using SMARTseq2 and 10X Genommics chemistries. Access is provided as a data package via ExperimentHub. It is designed to facilitate the re-use of data from Baran-Gale _et al._ in a consistent format that includes relevant and informative meta-data.

Author: Mike Morgan [aut, cre], Jeanette Baran-Gale [aut]

Maintainer: Mike Morgan <michael.morgan at cruk.cam.ac.uk>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MouseThymusAgeing")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseThymusAgeing")

 

HTML	R Script	Available datasets
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, SingleCellData
Version	1.0.0
License	GPL-3
Depends	SingleCellExperiment, SummarizedExperiment
Imports	ExperimentHub, methods, BiocGenerics, S4Vectors
LinkingTo
Suggests	knitr, scuttle, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
BugReports	https://github.com/MarioniLab/MouseThymusAgeing/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MouseThymusAgeing_1.0.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/MouseThymusAgeing
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MouseThymusAgeing
Package Short Url	https://bioconductor.org/packages/MouseThymusAgeing/
Package Downloads Report	Download Stats