LRcellTypeMarkers

DOI: 10.18129/B9.bioc.LRcellTypeMarkers    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see LRcellTypeMarkers.

Marker gene information for LRcell R Bioconductor package

Bioconductor version: 3.13

This is an external ExperimentData package for LRcell. This data package contains the gene enrichment scores calculated from scRNA-seq dataset which indicates the gene enrichment of each cell type in certain brain region. LRcell package is used to identify specific sub-cell types that drives the changes observed in a bulk RNA-seq differential gene expression experiment. For more details, please visit: https://github.com/marvinquiet/LRcell.

Author: Wenjing Ma [cre, aut]

Maintainer: Wenjing Ma <wenjing.ma at emory.edu>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LRcellTypeMarkers")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LRcellTypeMarkers")

 

HTML	R Script	LRcellTypeMarkers: Marker gene information for LRcell R Bioconductor package using Bioconductor's ExperimentHub
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, PackageTypeData, RNASeqData, SingleCellData
Version	1.0.0
License	MIT + file LICENSE
Depends	R (>= 4.1)
Imports	ExperimentHub
LinkingTo
Suggests	LRcell, BiocStyle, knitr, rmarkdown, roxygen2, testthat
SystemRequirements
Enhances
URL
BugReports	https://github.com/marvinquiet/LRcellTypeMarkers/issues
Depends On Me
Imports Me
Suggests Me	LRcell
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	LRcellTypeMarkers_1.0.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/LRcellTypeMarkers
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/LRcellTypeMarkers
Package Short Url	https://bioconductor.org/packages/LRcellTypeMarkers/
Package Downloads Report	Download Stats