KEGGandMetacoreDzPathwaysGEO

DOI: 10.18129/B9.bioc.KEGGandMetacoreDzPathwaysGEO    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see KEGGandMetacoreDzPathwaysGEO.

Disease Datasets from GEO

Bioconductor version: 3.13

This is a collection of 18 data sets for which the phenotype is a disease with a corresponding pathway in either KEGG or metacore database.This collection of datasets were used as gold standard in comparing gene set analysis methods.

Author: Gaurav Bhatti

Maintainer: Gaurav Bhatti <gbhatti at med.wayne.edu>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("KEGGandMetacoreDzPathwaysGEO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("KEGGandMetacoreDzPathwaysGEO")

 

PDF	R Script	KEGGandMetacoreDzPathwaysGEO Vignette
PDF		Reference Manual

Details

biocViews	ExperimentData, GEO
Version	1.12.0
License	GPL-2
Depends	R (>= 2.15.0)
Imports	Biobase, BiocGenerics
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	GSEABenchmarkeR
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	KEGGandMetacoreDzPathwaysGEO_1.12.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/KEGGandMetacoreDzPathwaysGEO
Package Short Url	https://bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO/
Package Downloads Report	Download Stats