CLLmethylation

DOI: 10.18129/B9.bioc.CLLmethylation    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see CLLmethylation.

Methylation data of primary CLL samples in PACE project

Bioconductor version: 3.13

The package includes DNA methylation data for the primary Chronic Lymphocytic Leukemia samples included in the Primary Blood Cancer Encyclopedia (PACE) project. Raw data from the 450k DNA methylation arrays is stored in the European Genome-Phenome Archive (EGA) under accession number EGAS0000100174. For more information concerning the project please refer to the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al., J. Clin. Invest. (2018) and R/Bioconductor package BloodCancerMultiOmics2017.

Author: Malgorzata Oles, Andreas Mock

Maintainer: Malgorzata Oles <dr.malgorzata.oles at gmail.com>, Andreas Mock <andreas.mock at embl.de>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CLLmethylation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CLLmethylation")

 

HTML	R Script	CLLmethylation
PDF		Reference Manual
Text		NEWS

Details

biocViews	CancerData, DiseaseModel, ExperimentData, LeukemiaCancerData
Version	1.12.0
License	LGPL
Depends	R (>= 3.5.0)
Imports	SummarizedExperiment, ExperimentHub
LinkingTo
Suggests	BiocStyle, ggplot2, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CLLmethylation_1.12.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/CLLmethylation
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CLLmethylation
Package Short Url	https://bioconductor.org/packages/CLLmethylation/
Package Downloads Report	Download Stats