Changes in version 1.0.11: USER VISIBLE CHANGES o db updated to PANTHER release v16.0 including new species Changes in version 1.0.10: USER VISIBLE CHANGES o db updated to PANTHER release v14.1 including new species o sqlite database moved to AnnotationHub o entrez db updated based on uniprot to entrez id mappings to include the latest entrez id to panther family id mappings o to limit the output, select queries now return only INNER joins hence dropping results with no FAMILY_ID association o left join can be enforced using argument jointype="left" in select query Changes in version 1.0.4: NO USER VISIBLE CHANGES o db updated to PANTHER release v12.0 o added all species available on http://pantherdb.org Changes in version 1.0.3: NO USER VISIBLE CHANGES Changes in version 1.0.2: USER VISIBLE CHANGES o db updated to PANTHER release v10.0 o rename of organism related methods: species(), availableSpecies() and resetSpecies() are now called pthOrganisms(), availablePthOrganisms() and resetPthOrganisms(). Functionality is unchanged. Changes in version 1.0.1: USER VISIBLE CHANGES o PANTHER.db is now using RSQLite v1.0 compliant code Changes in version 1.0.0: USER VISIBLE CHANGES o db updated to PANTHER release v9.0 o fixed a bug preventing COMPONENT_TERM queries o fixed a file permission bug o select queries will now return outer joins instead of inner joints i.e. incomplete results are allowed o species pre selection will strictly limit information from joined tables to information related to the selected species.