ENCODExplorerData

DOI: 10.18129/B9.bioc.ENCODExplorerData    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see ENCODExplorerData.

A compilation of ENCODE metadata

Bioconductor version: 3.13

This package allows user to quickly access ENCODE project files metadata and give access to helper functions to query the ENCODE rest api, download ENCODE datasets and save the database in SQLite format.

Author: Charles Joly Beauparlant [aut], Eric Fournier [aut, cre], Arnaud Droit [aut]

Maintainer: Eric Fournier <Fournier.Eric.2 at crchudequebec.ulaval.ca>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ENCODExplorerData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ENCODExplorerData")

 

HTML		Introduction to ENCODExplorerData
PDF		Reference Manual
Text		NEWS

Details

biocViews	AnnotationData, AnnotationHub, CustomDBSchema, Homo_sapiens, Mus_musculus
Version	0.99.5
License	Artistic-2.0
Depends	R (>= 3.6)
Imports	tools, jsonlite, RCurl, data.table, methods
LinkingTo
Suggests	AnnotationHub, RUnit, BiocGenerics, knitr, curl, httr
SystemRequirements
Enhances
URL
BugReports	https://github.com/ArnaudDroitLab/ENCODExplorerData/issues
Depends On Me
Imports Me	ENCODExplorer
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ENCODExplorerData_0.99.5.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Package Short Url	https://bioconductor.org/packages/ENCODExplorerData/
Package Downloads Report	Download Stats