Changes in version 1.6.6 o turn off auto sizing for large number of taxa or genes (>= 10.000) Changes in version 1.6.5 o fixed filter for "species relation" o added midpoint colors Changes in version 1.6.2 o increase default font size for profile and domain plot o make links to DBs: ncbi taxonomy, ncbi protein, uniprot, pfam, smart Changes in version 1.6.1 o modified taxonomy ranks (ropensci#875) o improved rank indexing function (ropensci#874) o improved x-axis label (#116) Changes in version 1.4.12 o domain plot works with group ID containing pipe Changes in version 1.4.11 o added check for invalid ids in newTaxa file Changes in version 1.4.10 o fixed bug comparing unk taxon IDs with max ncbi taxID Changes in version 1.4.9 o fixed bug comparing taxon IDs with max ncbi taxID Changes in version 1.4.8 o fixed bug filterProfileData (some filtered data could not be plotted) Changes in version 1.4.5 o Add auto sizing feature Changes in version 1.4.4 o Fixed orthoxml parsing function Changes in version 1.4.3 o Plot background for NA orthologs o Fixed highlight by categories Changes in version 1.4.2 o Fixed error when parsing large amount of new taxa o Improved the speed of parsing new taxa o Apply filter to refspec orthologs when not working with strain/species Changes in version 1.4.1 o Fixed bug data lost after filtering var2 o Add filter data to detailed plot Changes in version 1.3.11 o Add filter number of co-orthologs to parseInfoProfile() Changes in version 1.3.10 o Calculate percentage of present taxa after filtering of var1 and var2 o Fixed filter when working with high taxonomy ranks Changes in version 1.2.8 o Added new NCBI taxonomy ranks (e.g. biotype, isolate, pathogroup, ...) o Added function to reset taxonomy data Changes in version 1.2.7 o Solved problem with new NCBI taxonomy rank "clade" by replace them with "norank" Changes in version 1.2.6 o Fixed bug customized profile of subset of taxa not clickable Changes in version 1.2.4 o Fixed bug checking invalid taxon IDs Changes in version 1.2.1 o Fixed bug in rankIndexing and processNcbiTaxonomy o Improved check for invalid input taxon IDs Changes in version 1.1.12 o Added pseudo IDs for Holozoa and Holomycota clades and their non-NCBI sub-clades Changes in version 1.1.11 o Increased the resolution of the phylostratigraphy function Changes in version 1.1.10 o Improved the rank indexing function Changes in version 1.1.6 o Removed grDevices, grid, stats, utils from Imports list in DESCRIPTION Changes in version 1.1.5 o Added progress indicators for data loading and processing steps o Removed shinycssloaders Changes in version 1.1.3 o Fixed bug listing taxa by selecting a supertaxon from a higher level o Added message for downloading preprocessed data Changes in version 1.1.2 o Fixed bug sorting taxa when taxonomy rank is set as strain Changes in version 1.1.1 o Commented examples of OMA parser functions o Turned off tests for OMA parser functions Changes in version 0.99.31 o Submitted to Bioconductor