Changes in version 1.59.5 - Merge inst/NEWS to NEWS.md Changes in version 1.59.4 - Update broken links in vignette. - Update broken links in vignette. - Add BugReports link. - Add missing dependencies 'rmarkdown' and 'bookdown' to Suggests. Changes in version 1.59.3 - Package undeprecated by the Bioconductor maintainers. Changes in version 1.59.2 - Turned old .Rnw vignette to .Rmd vignette. - GLAD no more listed in Depends (only in Imports). - Moved to UTF-8 encoding (to cope with French accents). - Updated maintainer email address. - Fixed "register native routines and to disable symbol search". - Use R's RNG instead of the one from the system in C code. Changes in version 1.37.2 (2014-10-01) - Removed unused C functions for I/O in 'lib_io'. Changes in version 1.37.1 (2014-10-01) - Minor changes to C code to avoid WARNINGS upon R CMD check. - Changed 'par' settings in vignette to avoid 'Figure margins too large' errors. Changes in version 1.33.1 (2013-07-03) - Replaced calls to 'exit', 'fprintf' which now raise a WARNING upon check. - Iteration index not printed anymore in 'nem' (raised an error when compiling the vignette). Changes in version 1.23.3 (2011-03-18) - Updated calls to 'GLAD:::daglad' in the vignette to fix an error caused by changes in the defaults of 'daglad'. Changes in version 1.21.1 (2010-10-01) - Cleaned 'data/flags.RData" which contained objects from an old 'globalenv'. - Updated maintainer's email address. Changes in version 1.19.1 (2010-01-24) - Added (back) 'intensity.flag' to 'data/flags.RData' (had been removed since v 1.12.0 for an unknown reason). Changes in version 1.15.4 (2009-01-15) - misplaced alignment tab in man/spatial.Rd. Changes in version 1.15.3 (2009-01-13) - updated references in .Rd files. - fixed warnings due to incorrect use of \item in .Rd files. Changes in version 1.15.2 (2009-01-06) - 'norm' and 'sort' are now S3 methods as well Changes in version 1.15.1 (2009-01-04) - (almost) one file per function in R/ - removed empty section \details in man/qscore.Rd - added a NAMESPACE - removed inst/doc/Makefile (not needed anymore because no html output required) - removed another non-standard keyword - only one keyword per \keyword entry... Changes in version 1.15.0 (2008-12-31) - now use standard "keyword"s - changed \link{\code{stuff}} into \code{\link{stuff}} - filled in "keyword" sections in .Rd files. - removed empty "examples" sections from .Rd files. - initialized a few variables upon declaration in C code to prevent warnings in R CMD CHECK. Changes in version 1.13.2 (2008-09-23) - modification de la fonction cv pour retourner NA lorsque toutes la valeurs du vecteur sont à NA - modification de la function getChromosomeArm pour que cytoband ne soit pas positionnée à NULL Changes in version 1.13.1 (2008-09-04) - added a CHANGELOG - updated outdated reference in the .bib file - changed the definition of flag "rep.flag" to avoid the error now caused by sd(NA, na.rm=TRUE)