switchBox

DOI: 10.18129/B9.bioc.switchBox    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see switchBox.

Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair (KTSP) algorithm

Bioconductor version: 3.13

The package offer different classifiers based on comparisons of pair of features (TSP), using various decision rules (e.g., majority wins principle).

Author: Bahman Afsari <bahman at jhu.edu>, Luigi Marchionni <marchion at jhu.edu>, Wikum Dinalankara <wdinala1 at jhmi.edu>

Maintainer: Bahman Afsari <bahman at jhu.edu>, Luigi Marchionni <marchion at jhu.edu>, Wikum Dinalankara <wdinala1 at jhmi.edu>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("switchBox")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("switchBox")

 

PDF	R Script	Working with the switchBox package
PDF		Reference Manual

Details

biocViews	Classification, Software, StatisticalMethod
Version	1.28.0
In Bioconductor since	BioC 3.0 (R-3.1) (7 years)
License	GPL-2
Depends	R (>= 2.13.1), pROC, gplots
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	PDATK
Suggests Me	multiclassPairs
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	switchBox_1.28.0.tar.gz
Windows Binary	switchBox_1.28.0.zip
macOS 10.13 (High Sierra)	switchBox_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/switchBox
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/switchBox
Package Short Url	https://bioconductor.org/packages/switchBox/
Package Downloads Report	Download Stats