seqCNA

DOI: 10.18129/B9.bioc.seqCNA    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see seqCNA.

Copy number analysis of high-throughput sequencing cancer data

Bioconductor version: 3.13

Copy number analysis of high-throughput sequencing cancer data with fast summarization, extensive filtering and improved normalization

Author: David Mosen-Ansorena

Maintainer: David Mosen-Ansorena <dmosen.gn at cicbiogune.es>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("seqCNA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqCNA")

 

PDF	R Script	seqCNA.pdf
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Genetics, Sequencing, Software
Version	1.38.0
In Bioconductor since	BioC 2.13 (R-3.0) (8 years)
License	GPL-3
Depends	R (>= 3.0), GLAD(>= 2.14), doSNOW (>= 1.0.5), adehabitatLT (>= 0.3.4), seqCNA.annot(>= 0.99), methods
Imports
LinkingTo
Suggests
SystemRequirements	samtools
Enhances
URL
Depends On Me
Imports Me
Suggests Me	Herper
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	seqCNA_1.38.0.tar.gz
Windows Binary	seqCNA_1.38.0.zip
macOS 10.13 (High Sierra)	seqCNA_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/seqCNA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/seqCNA
Package Short Url	https://bioconductor.org/packages/seqCNA/
Package Downloads Report	Download Stats