sechm

DOI: 10.18129/B9.bioc.sechm    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see sechm.

sechm: Complex Heatmaps from a SummarizedExperiment

Bioconductor version: 3.13

sechm provides a simple interface between SummarizedExperiment objects and the ComplexHeatmap package. It enables plotting annotated heatmaps from SE objects, with easy access to rowData and colData columns, and implements a number of features to make the generation of heatmaps easier and more flexible. These functionalities used to be part of the SEtools package.

Author: Pierre-Luc Germain [cre, aut]

Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sechm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sechm")

 

HTML	R Script	sechm
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneExpression, Software, Visualization
Version	1.0.0
In Bioconductor since	BioC 3.13 (R-4.1) (< 6 months)
License	GPL-3
Depends	R (>= 4.1)
Imports	S4Vectors, SummarizedExperiment, seriation, ComplexHeatmap, circlize, methods, randomcoloR, stats, grid, grDevices
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
BugReports	https://github.com/plger/sechm
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	sechm_1.0.0.tar.gz
Windows Binary	sechm_1.0.0.zip
macOS 10.13 (High Sierra)	sechm_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/sechm
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/sechm
Package Short Url	https://bioconductor.org/packages/sechm/
Package Downloads Report	Download Stats