scTHI

DOI: 10.18129/B9.bioc.scTHI    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see scTHI.

Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing data

Bioconductor version: 3.13

scTHI is an R package to identify active pairs of ligand-receptors from single cells in order to study,among others, tumor-host interactions. scTHI contains a set of signatures to classify cells from the tumor microenvironment.

Author: Francesca Pia Caruso [aut], Michele Ceccarelli [aut, cre]

Maintainer: Michele Ceccarelli <m.ceccarelli at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scTHI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scTHI")

 

HTML	R Script	Using scTHI
PDF		Reference Manual
Text		NEWS

Details

biocViews	SingleCell, Software
Version	1.4.0
In Bioconductor since	BioC 3.11 (R-4.0) (1.5 years)
License	GPL-2
Depends	R (>= 4.0)
Imports	BiocParallel, Rtsne, grDevices, graphics, stats
LinkingTo
Suggests	scTHI.data, knitr, rmarkdown
SystemRequirements
Enhances
URL
BugReports	https://github.com/miccec/scTHI/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	scTHI_1.4.0.tar.gz
Windows Binary	scTHI_1.4.0.zip
macOS 10.13 (High Sierra)	scTHI_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/scTHI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/scTHI
Package Short Url	https://bioconductor.org/packages/scTHI/
Package Downloads Report	Download Stats