scTGIF

DOI: 10.18129/B9.bioc.scTGIF    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see scTGIF.

Cell type annotation for unannotated single-cell RNA-Seq data

Bioconductor version: 3.13

scTGIF connects the cells and the related gene functions without cell type label.

Author: Koki Tsuyuzaki [aut, cre]

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scTGIF")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scTGIF")

 

HTML	R Script	scTGIF
PDF		Reference Manual
Text		NEWS

Details

biocViews	DimensionReduction, GeneExpression, QualityControl, SingleCell, Software
Version	1.6.0
In Bioconductor since	BioC 3.10 (R-3.6) (2 years)
License	Artistic-2.0
Depends	R (>= 3.6.0)
Imports	GSEABase, Biobase, SingleCellExperiment, BiocStyle, plotly, tagcloud, rmarkdown, Rcpp, grDevices, graphics, utils, knitr, S4Vectors, SummarizedExperiment, RColorBrewer, nnTensor, methods, scales, msigdbr, schex, tibble, ggplot2, igraph
LinkingTo
Suggests	testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	scTensor
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	scTGIF_1.6.0.tar.gz
Windows Binary	scTGIF_1.6.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra)	scTGIF_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/scTGIF
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/scTGIF
Package Short Url	https://bioconductor.org/packages/scTGIF/
Package Downloads Report	Download Stats