rnaSeqMap

DOI: 10.18129/B9.bioc.rnaSeqMap    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see rnaSeqMap.

rnaSeq secondary analyses

Bioconductor version: 3.13

The rnaSeqMap library provides classes and functions to analyze the RNA-sequencing data using the coverage profiles in multiple samples at a time

Author: Anna Lesniewska <alesniewska at cs.put.poznan.pl>; Michal Okoniewski <michal at fgcz.ethz.ch>

Maintainer: Michal Okoniewski <michal at fgcz.ethz.ch>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rnaSeqMap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Annotation, DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, ReportWriting, SAGE, Sequencing, Software, Transcription, Visualization
Version	2.50.0
In Bioconductor since	BioC 2.7 (R-2.12) (11 years)
License	GPL-2
Depends	R (>= 2.11.0), methods, Biobase, Rsamtools, GenomicAlignments
Imports	GenomicRanges, IRanges, edgeR, DESeq, DBI
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/rnaSeqMap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rnaSeqMap
Package Short Url	https://bioconductor.org/packages/rnaSeqMap/
Package Downloads Report	Download Stats