pdInfoBuilder

DOI: 10.18129/B9.bioc.pdInfoBuilder    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see pdInfoBuilder.

Platform Design Information Package Builder

Bioconductor version: 3.13

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

Author: Seth Falcon, Vince Carey, Matt Settles, Kristof de Beuf, Benilton Carvalho

Maintainer: Benilton Carvalho <benilton at unicamp.br>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pdInfoBuilder")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pdInfoBuilder")

 

PDF		Building Annotation Packages with pdInfoBuilder for Use with the oligo Package
PDF	R Script	PDInfo Package Building Affymetrix Mapping Chips
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, Infrastructure, Software
Version	1.56.0
In Bioconductor since	BioC 2.0 (R-2.5) (14.5 years)
License	Artistic-2.0
Depends	R (>= 3.2.0), methods, Biobase(>= 2.27.3), RSQLite (>= 1.0.0), affxparser(>= 1.39.4), oligo(>= 1.31.5)
Imports	Biostrings(>= 2.35.12), BiocGenerics(>= 0.13.11), DBI (>= 0.3.1), IRanges(>= 2.1.43), oligoClasses(>= 1.29.6), S4Vectors(>= 0.5.22)
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	maqcExpression4plex
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	pdInfoBuilder_1.56.0.tar.gz
Windows Binary	pdInfoBuilder_1.56.0.zip
macOS 10.13 (High Sierra)	pdInfoBuilder_1.56.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/pdInfoBuilder
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/pdInfoBuilder
Package Short Url	https://bioconductor.org/packages/pdInfoBuilder/
Package Downloads Report	Download Stats