optimalFlow

DOI: 10.18129/B9.bioc.optimalFlow    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see optimalFlow.

optimalFlow

Bioconductor version: 3.13

Optimal-transport techniques applied to supervised flow cytometry gating.

Author: Hristo Inouzhe <hristo.inouzhe at gmail.com>

Maintainer: Hristo Inouzhe <hristo.inouzhe at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("optimalFlow")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("optimalFlow")

 

HTML	R Script	optimalFlow: optimal-transport approach to Flow Cytometry analysis
PDF		Reference Manual

Details

biocViews	FlowCytometry, Software, Technology
Version	1.4.0
In Bioconductor since	BioC 3.11 (R-4.0) (1.5 years)
License	Artistic-2.0
Depends	dplyr, optimalFlowData, rlang (>= 0.4.0)
Imports	transport, parallel, Rfast, robustbase, dbscan, randomForest, foreach, graphics, doParallel, stats, flowMeans, rgl, ellipse
LinkingTo
Suggests	knitr, BiocStyle, rmarkdown, magick
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	optimalFlow_1.4.0.tar.gz
Windows Binary	optimalFlow_1.4.0.zip
macOS 10.13 (High Sierra)	optimalFlow_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/optimalFlow
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/optimalFlow
Package Short Url	https://bioconductor.org/packages/optimalFlow/
Package Downloads Report	Download Stats