netboost

DOI: 10.18129/B9.bioc.netboost    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see netboost.

Network Analysis Supported by Boosting

Bioconductor version: 3.13

Boosting supported network analysis for high-dimensional omics applications. This package comes bundled with the MC-UPGMA clustering package by Yaniv Loewenstein.

Author: Pascal Schlosser [aut, cre], Jochen Knaus [aut, ctb], Yaniv Loewenstein [aut]

Maintainer: Pascal Schlosser <pascal.schlosser at uniklinik-freiburg.de>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("netboost")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netboost")

 

HTML	R Script	The Netboost users guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	BiomedicalInformatics, Clustering, DimensionReduction, Epigenetics, GraphAndNetwork, Metabolomics, Network, Software, StatisticalMethod, Transcriptomics
Version	2.0.0
In Bioconductor since	BioC 3.9 (R-3.6) (2.5 years)
License	GPL-3
Depends	R (>= 4.0.0)
Imports	Rcpp, RcppParallel, parallel, grDevices, graphics, stats, utils, dynamicTreeCut, WGCNA, impute, colorspace, methods, R.utils
LinkingTo	Rcpp, RcppParallel
Suggests	knitr, rmarkdown
SystemRequirements	GNU make, Bash, Perl, Gzip
Enhances
URL	https://bioconductor.org/packages/release/bioc/html/netboost.html
BugReports	https://github.com/PascalSchlosser/netboost/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	netboost_2.0.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)	netboost_2.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/netboost
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/netboost
Package Short Url	https://bioconductor.org/packages/netboost/
Package Downloads Report	Download Stats