metapod

DOI: 10.18129/B9.bioc.metapod    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see metapod.

Meta-Analyses on P-Values of Differential Analyses

Bioconductor version: 3.13

Implements a variety of methods for combining p-values in differential analyses of genome-scale datasets. Functions can combine p-values across different tests in the same analysis (e.g., genomic windows in ChIP-seq, exons in RNA-seq) or for corresponding tests across separate analyses (e.g., replicated comparisons, effect of different treatment conditions). Support is provided for handling log-transformed input p-values, missing values and weighting where appropriate.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("metapod")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metapod")

 

HTML	R Script	Meta-analysis strategies
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialPeakCalling, MultipleComparison, Software
Version	1.0.0
In Bioconductor since	BioC 3.13 (R-4.1) (< 6 months)
License	GPL-3
Depends
Imports	Rcpp
LinkingTo	Rcpp
Suggests	testthat, knitr, BiocStyle, rmarkdown
SystemRequirements	C++11
Enhances
URL
Depends On Me
Imports Me	csaw, mumosa, scran
Suggests Me	TSCAN
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	metapod_1.0.0.tar.gz
Windows Binary	metapod_1.0.0.zip
macOS 10.13 (High Sierra)	metapod_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/metapod
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/metapod
Package Short Url	https://bioconductor.org/packages/metapod/
Package Downloads Report	Download Stats