mBPCR

DOI: 10.18129/B9.bioc.mBPCR    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see mBPCR.

Bayesian Piecewise Constant Regression for DNA copy number estimation

Bioconductor version: 3.13

It contains functions for estimating the DNA copy number profile using mBPCR with the aim of detecting regions with copy number changes.

Author: P.M.V. Rancoita <rancoita.paola at gmail.com>, with contributions from M. Hutter <marcus.hutter at anu.edu.au>

Maintainer: P.M.V. Rancoita <rancoita.paola at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mBPCR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mBPCR")

 

PDF	R Script	mBPCR
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Microarray, SNP, Software, aCGH
Version	1.46.0
In Bioconductor since	BioC 2.5 (R-2.10) (12 years)
License	GPL (>= 2)
Depends	oligoClasses, GWASTools
Imports	Biobase, graphics, methods, utils, grDevices
LinkingTo
Suggests	xtable
SystemRequirements
Enhances
URL	http://www.idsia.ch/~paola/mBPCR
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mBPCR_1.46.0.tar.gz
Windows Binary	mBPCR_1.46.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra)	mBPCR_1.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/mBPCR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/mBPCR
Package Short Url	https://bioconductor.org/packages/mBPCR/
Package Downloads Report	Download Stats