ivygapSE

DOI: 10.18129/B9.bioc.ivygapSE    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see ivygapSE.

A SummarizedExperiment for Ivy-GAP data

Bioconductor version: 3.13

Define a SummarizedExperiment and exploratory app for Ivy-GAP glioblastoma image, expression, and clinical data.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("ivygapSE")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ivygapSE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ivygapSE")

 

HTML R Script ivygapSE -- SummarizedExperiment for Ivy-GAP
PDF   Reference Manual

Details

biocViews GeneExpression, Sequencing, Software, Survival, Transcription, Visualization
Version 1.14.1
In Bioconductor since BioC 3.6 (R-3.4) (4 years)
License Artistic-2.0
Depends R (>= 3.5.0), SummarizedExperiment
Imports shiny, survival, survminer, hwriter, plotly, ggplot2, S4Vectors, graphics, stats, utils, UpSetR
LinkingTo
Suggests knitr, png, limma, grid, DT, randomForest, digest, testthat, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ivygapSE_1.14.1.tar.gz
Windows Binary ivygapSE_1.14.1.zip
macOS 10.13 (High Sierra) ivygapSE_1.14.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/ivygapSE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ivygapSE
Package Short Url https://bioconductor.org/packages/ivygapSE/
Package Downloads Report Download Stats

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