interacCircos

DOI: 10.18129/B9.bioc.interacCircos    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see interacCircos.

The Generation of Interactive Circos Plot

Bioconductor version: 3.13

Implement in an efficient approach to display the genomic data, relationship, information in an interactive circular genome(Circos) plot. 'interacCircos' are inspired by 'circosJS', 'BioCircos.js' and 'NG-Circos' and we integrate the modules of 'circosJS', 'BioCircos.js' and 'NG-Circos' into this R package, based on 'htmlwidgets' framework.

Author: Zhe Cui [aut, cre]

Maintainer: Zhe Cui <mrcuizhe at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("interacCircos")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("interacCircos")

 

HTML	R Script	interacCircos
PDF		Reference Manual

Details

biocViews	Software, Visualization
Version	1.2.0
In Bioconductor since	BioC 3.13 (R-4.1) (< 6 months)
License	GPL-3
Depends	R (>= 4.1)
Imports	RColorBrewer, htmlwidgets, plyr, methods
LinkingTo
Suggests	knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	interacCircos_1.2.0.tar.gz
Windows Binary	interacCircos_1.2.0.zip
macOS 10.13 (High Sierra)	interacCircos_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/interacCircos
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/interacCircos
Package Short Url	https://bioconductor.org/packages/interacCircos/
Package Downloads Report	Download Stats