hypeR

DOI: 10.18129/B9.bioc.hypeR    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see hypeR.

An R Package For Geneset Enrichment Workflows

Bioconductor version: 3.13

An R Package for Geneset Enrichment Workflows.

Author: Anthony Federico [aut, cre], Stefano Monti [aut]

Maintainer: Anthony Federico <anfed at bu.edu>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("hypeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("hypeR")

 

HTML	R Script	hypeR
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Annotation, GeneSetEnrichment, Pathways, Software
Version	1.8.0
In Bioconductor since	BioC 3.9 (R-3.6) (2.5 years)
License	GPL-3 + file LICENSE
Depends	R (>= 3.6.0)
Imports	ggplot2, ggforce, R6, magrittr, dplyr, purrr, stats, stringr, scales, rlang, httr, openxlsx, htmltools, reshape2, reactable, msigdbr, kableExtra, rmarkdown, igraph, visNetwork, shiny
LinkingTo
Suggests	tidyverse, devtools, testthat, knitr
SystemRequirements
Enhances
URL	https://github.com/montilab/hypeR
BugReports	https://github.com/montilab/hypeR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	hypeR_1.8.0.tar.gz
Windows Binary	hypeR_1.8.0.zip
macOS 10.13 (High Sierra)	hypeR_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/hypeR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/hypeR
Package Short Url	https://bioconductor.org/packages/hypeR/
Package Downloads Report	Download Stats