fdrame

DOI: 10.18129/B9.bioc.fdrame    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see fdrame.

FDR adjustments of Microarray Experiments (FDR-AME)

Bioconductor version: 3.13

This package contains two main functions. The first is fdr.ma which takes normalized expression data array, experimental design and computes adjusted p-values It returns the fdr adjusted p-values and plots, according to the methods described in (Reiner, Yekutieli and Benjamini 2002). The second, is fdr.gui() which creates a simple graphic user interface to access fdr.ma

Author: Yoav Benjamini, Effi Kenigsberg, Anat Reiner, Daniel Yekutieli

Maintainer: Effi Kenigsberg <effiken.fdrame at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fdrame")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fdrame")

 

PDF		Annotation Overview
PDF		Reference Manual

Details

biocViews	DifferentialExpression, Microarray, MultipleComparison, Software
Version	1.64.0
In Bioconductor since	BioC 1.7 (R-2.2) (16 years)
License	GPL (>= 2)
Depends
Imports	tcltk, graphics, grDevices, stats, utils
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	fdrame_1.64.0.tar.gz
Windows Binary	fdrame_1.64.0.zip
macOS 10.13 (High Sierra)	fdrame_1.64.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/fdrame
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/fdrame
Package Short Url	https://bioconductor.org/packages/fdrame/
Package Downloads Report	Download Stats