evaluomeR

DOI: 10.18129/B9.bioc.evaluomeR    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see evaluomeR.

Evaluation of Bioinformatics Metrics

Bioconductor version: 3.13

Evaluating the reliability of your own metrics and the measurements done on your own datasets by analysing the stability and goodness of the classifications of such metrics.

Author: José Antonio Bernabé-Díaz [aut, cre], Manuel Franco [aut], Juana-María Vivo [aut], Manuel Quesada-Martínez [aut], Astrid Duque-Ramos [aut], Jesualdo Tomás Fernández-Breis [aut]

Maintainer: José Antonio Bernabé-Díaz <joseantonio.bernabe1 at um.es>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("evaluomeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("evaluomeR")

 

HTML	R Script	Evaluation of Bioinformatics Metrics with evaluomeR
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Classification, Clustering, FeatureExtraction, Software
Version	1.8.0
In Bioconductor since	BioC 3.9 (R-3.6) (2.5 years)
License	GPL-3
Depends	R (>= 3.6), SummarizedExperiment, MultiAssayExperiment, cluster (>= 2.0.9), fpc (>= 2.2-3), randomForest (>= 4.6.14), flexmix (>= 2.3.15)
Imports	corrplot (>= 0.84), grDevices, graphics, reshape2, ggplot2, ggdendro, plotrix, stats, matrixStats, Rdpack, MASS, class, prabclus, mclust, kableExtra
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, magrittr
SystemRequirements
Enhances
URL	https://github.com/neobernad/evaluomeR
BugReports	https://github.com/neobernad/evaluomeR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	evaluomeR_1.8.0.tar.gz
Windows Binary	evaluomeR_1.8.0.zip (64-bit only)
macOS 10.13 (High Sierra)	evaluomeR_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/evaluomeR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/evaluomeR
Package Short Url	https://bioconductor.org/packages/evaluomeR/
Package Downloads Report	Download Stats