This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see bluster.
Bioconductor version: 3.13
Wraps common clustering algorithms in an easily extended S4 framework. Backends are implemented for hierarchical, k-means and graph-based clustering. Several utilities are also provided to compare and evaluate clustering results.
Author: Aaron Lun [aut, cre], Stephanie Hicks [ctb]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
Citation (from within R,
enter citation("bluster")
):
To install this package, start R (version "4.1") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("bluster")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("bluster")
HTML | R Script | 1. Clustering algorithms |
HTML | R Script | 2. Clustering diagnostics |
Reference Manual | ||
Text | NEWS |
biocViews | Clustering, GeneExpression, ImmunoOncology, SingleCell, Software, Transcriptomics |
Version | 1.2.1 |
In Bioconductor since | BioC 3.12 (R-4.0) (1 year) |
License | GPL-3 |
Depends | |
Imports | stats, methods, utils, cluster, Matrix, Rcpp, igraph, S4Vectors, BiocParallel, BiocNeighbors |
LinkingTo | Rcpp |
Suggests | knitr, rmarkdown, testthat, BiocStyle, dynamicTreeCut, scRNAseq, scuttle, scater, scran, pheatmap, viridis, mbkmeans, kohonen, apcluster |
SystemRequirements | C++11 |
Enhances | |
URL | |
Depends On Me | OSCA.advanced, OSCA.basic, OSCA.intro, OSCA.multisample, OSCA.workflows |
Imports Me | scDblFinder, scran |
Suggests Me | batchelor, dittoSeq, mbkmeans, mumosa |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | bluster_1.2.1.tar.gz |
Windows Binary | bluster_1.2.1.zip (32- & 64-bit) |
macOS 10.13 (High Sierra) | bluster_1.2.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/bluster |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/bluster |
Package Short Url | https://bioconductor.org/packages/bluster/ |
Package Downloads Report | Download Stats |
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