bluster

DOI: 10.18129/B9.bioc.bluster    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see bluster.

Clustering Algorithms for Bioconductor

Bioconductor version: 3.13

Wraps common clustering algorithms in an easily extended S4 framework. Backends are implemented for hierarchical, k-means and graph-based clustering. Several utilities are also provided to compare and evaluate clustering results.

Author: Aaron Lun [aut, cre], Stephanie Hicks [ctb]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bluster")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bluster")

 

HTML	R Script	1. Clustering algorithms
HTML	R Script	2. Clustering diagnostics
PDF		Reference Manual
Text		NEWS

Details

biocViews	Clustering, GeneExpression, ImmunoOncology, SingleCell, Software, Transcriptomics
Version	1.2.1
In Bioconductor since	BioC 3.12 (R-4.0) (1 year)
License	GPL-3
Depends
Imports	stats, methods, utils, cluster, Matrix, Rcpp, igraph, S4Vectors, BiocParallel, BiocNeighbors
LinkingTo	Rcpp
Suggests	knitr, rmarkdown, testthat, BiocStyle, dynamicTreeCut, scRNAseq, scuttle, scater, scran, pheatmap, viridis, mbkmeans, kohonen, apcluster
SystemRequirements	C++11
Enhances
URL
Depends On Me	OSCA.advanced, OSCA.basic, OSCA.intro, OSCA.multisample, OSCA.workflows
Imports Me	scDblFinder, scran
Suggests Me	batchelor, dittoSeq, mbkmeans, mumosa
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	bluster_1.2.1.tar.gz
Windows Binary	bluster_1.2.1.zip (32- & 64-bit)
macOS 10.13 (High Sierra)	bluster_1.2.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/bluster
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/bluster
Package Short Url	https://bioconductor.org/packages/bluster/
Package Downloads Report	Download Stats