This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see TreeSummarizedExperiment.
Bioconductor version: 3.13
TreeSummarizedExperiment has extended SingleCellExperiment to include hierarchical information on the rows or columns of the rectangular data.
Author: Ruizhu Huang [aut, cre] , Felix G.M. Ernst [ctb]
Maintainer: Ruizhu Huang <ruizhuRH at gmail.com>
Citation (from within R,
enter citation("TreeSummarizedExperiment")
):
To install this package, start R (version "4.1") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("TreeSummarizedExperiment")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TreeSummarizedExperiment")
HTML | R Script | 1. Introduction to TreeSE |
HTML | R Script | 2. Combine TSEs |
Reference Manual |
biocViews | DataRepresentation, Infrastructure, Software |
Version | 2.0.3 |
In Bioconductor since | BioC 3.9 (R-3.6) (2.5 years) |
License | GPL (>=2) |
Depends | R (>= 3.6.0), SingleCellExperiment, S4Vectors(>= 0.23.18), Biostrings |
Imports | methods, BiocGenerics, utils, ape, rlang, dplyr, SummarizedExperiment, BiocParallel, IRanges, treeio |
LinkingTo | |
Suggests | ggtree, ggplot2, BiocStyle, knitr, rmarkdown, testthat |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | curatedMetagenomicData, ExperimentSubset, mia, miaViz, microbiomeDataSets |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | TreeSummarizedExperiment_2.0.3.tar.gz |
Windows Binary | TreeSummarizedExperiment_2.0.3.zip |
macOS 10.13 (High Sierra) | TreeSummarizedExperiment_2.0.3.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/TreeSummarizedExperiment |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TreeSummarizedExperiment |
Package Short Url | https://bioconductor.org/packages/TreeSummarizedExperiment/ |
Package Downloads Report | Download Stats |
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