ScaledMatrix

DOI: 10.18129/B9.bioc.ScaledMatrix    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see ScaledMatrix.

Creating a DelayedMatrix of Scaled and Centered Values

Bioconductor version: 3.13

Provides delayed computation of a matrix of scaled and centered values. The result is equivalent to using the scale() function but avoids explicit realization of a dense matrix during block processing. This permits greater efficiency in common operations, most notably matrix multiplication.

Author: Aaron Lun [aut, cre, cph]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ScaledMatrix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ScaledMatrix")

 

HTML	R Script	Using the ScaledMatrix
PDF		Reference Manual

Details

biocViews	DataRepresentation, Software
Version	1.0.0
In Bioconductor since	BioC 3.13 (R-4.1) (< 6 months)
License	GPL-3
Depends
Imports	methods, Matrix, S4Vectors, DelayedArray
LinkingTo
Suggests	testthat, BiocStyle, knitr, rmarkdown, BiocSingular
SystemRequirements
Enhances
URL	https://github.com/LTLA/ScaledMatrix
BugReports	https://github.com/LTLA/ScaledMatrix/issues
Depends On Me
Imports Me	batchelor, BiocSingular, mumosa, scPCA
Suggests Me	scran
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ScaledMatrix_1.0.0.tar.gz
Windows Binary	ScaledMatrix_1.0.0.zip
macOS 10.13 (High Sierra)	ScaledMatrix_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ScaledMatrix
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ScaledMatrix
Package Short Url	https://bioconductor.org/packages/ScaledMatrix/
Package Downloads Report	Download Stats