SANTA

DOI: 10.18129/B9.bioc.SANTA    

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SANTA.

Spatial Analysis of Network Associations

Bioconductor version: 3.13

This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network (Knet). Vertices can also be individually ranked by their strength of association with high-weight vertices (Knode).

Author: Alex Cornish [cre, aut]

Maintainer: Alex Cornish <alex.cornish at icr.ac.uk>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SANTA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SANTA")

 

HTML	R Script	Introduction to SANTA
PDF		Reference Manual
Text		NEWS

Details

biocViews	Clustering, Network, NetworkEnrichment, Software
Version	2.28.0
In Bioconductor since	BioC 2.12 (R-3.0) (8.5 years)
License	GPL (>= 2)
Depends	R (>= 4.1), igraph
Imports	graphics, Matrix, methods, stats
LinkingTo
Suggests	RUnit, BiocGenerics, knitr, formatR, org.Sc.sgd.db, BioNet, DLBCL, msm
SystemRequirements
Enhances
URL
BugReports	https://github.com/alexjcornish/SANTA
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SANTA_2.28.0.tar.gz
Windows Binary	SANTA_2.28.0.zip
macOS 10.13 (High Sierra)	SANTA_2.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SANTA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SANTA
Package Short Url	https://bioconductor.org/packages/SANTA/
Package Downloads Report	Download Stats