PrecisionTrialDrawer

DOI: 10.18129/B9.bioc.PrecisionTrialDrawer    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see PrecisionTrialDrawer.

A Tool to Analyze and Design NGS Based Custom Gene Panels

Bioconductor version: 3.13

A suite of methods to design umbrella and basket trials for precision oncology.

Author: Giorgio Melloni, Alessandro Guida, Luca Mazzarella

Maintainer: Giorgio Melloni <melloni.giorgio at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PrecisionTrialDrawer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PrecisionTrialDrawer")

 

HTML	R Script	Bioconductor style for HTML documents
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, GeneExpression, Sequencing, Software, SomaticMutation, WholeGenome
Version	1.8.0
In Bioconductor since	BioC 3.9 (R-3.6) (2.5 years)
License	GPL-3
Depends	R (>= 3.6)
Imports	graphics, grDevices, stats, utils, methods, cgdsr, parallel, stringr, reshape2, data.table, RColorBrewer, BiocParallel, magrittr, biomaRt, XML, httr, jsonlite, ggplot2, ggrepel, grid, S4Vectors, IRanges, GenomicRanges, LowMACAAnnotation, googleVis, shiny, shinyBS, DT, brglm, matrixStats
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, dplyr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PrecisionTrialDrawer_1.8.0.tar.gz
Windows Binary	PrecisionTrialDrawer_1.8.0.zip
macOS 10.13 (High Sierra)	PrecisionTrialDrawer_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PrecisionTrialDrawer
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PrecisionTrialDrawer
Package Short Url	https://bioconductor.org/packages/PrecisionTrialDrawer/
Package Downloads Report	Download Stats