NanoStringNCTools

DOI: 10.18129/B9.bioc.NanoStringNCTools    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see NanoStringNCTools.

NanoString nCounter Tools

Bioconductor version: 3.13

Tools for NanoString Technologies nCounter Technology. Provides support for reading RCC files into an ExpressionSet derived object. Also includes methods for QC and normalizaztion of NanoString data.

Author: Patrick Aboyoun [aut], Nicole Ortogero [cre], Zhi Yang [ctb]

Maintainer: Nicole Ortogero <nortogero at nanostring.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("NanoStringNCTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NanoStringNCTools")

 

HTML	R Script	Introduction to the NanoStringRCCSet Class
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBasedAssays, DataImport, GeneExpression, ProprietaryPlatforms, Proteomics, RNASeq, Software, Transcription, Transcriptomics, mRNAMicroarray
Version	1.0.0
In Bioconductor since	BioC 3.13 (R-4.1) (< 6 months)
License	Artistic-2.0
Depends	R (>= 3.6), Biobase, S4Vectors, ggplot2
Imports	BiocGenerics, Biostrings, ggbeeswarm, ggiraph, ggthemes, grDevices, IRanges, methods, pheatmap, RColorBrewer, stats, utils
LinkingTo
Suggests	biovizBase, ggbio, RUnit, rmarkdown, knitr, qpdf
SystemRequirements
Enhances
URL
Depends On Me	GeomxTools
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	NanoStringNCTools_1.0.0.tar.gz
Windows Binary	NanoStringNCTools_1.0.0.zip
macOS 10.13 (High Sierra)	NanoStringNCTools_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/NanoStringNCTools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/NanoStringNCTools
Package Short Url	https://bioconductor.org/packages/NanoStringNCTools/
Package Downloads Report	Download Stats