MSstatsConvert

DOI: 10.18129/B9.bioc.MSstatsConvert    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see MSstatsConvert.

Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format

Bioconductor version: 3.13

MSstatsConvert provides tools for importing reports of Mass Spectrometry data processing tools into R format suitable for statistical analysis using the MSstats and MSstatsTMT packages.

Author: Mateusz Staniak [aut, cre], Meena Choi [aut], Ting Huang [aut], Olga Vitek [aut]

Maintainer: Mateusz Staniak <mtst at mstaniak.pl>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MSstatsConvert")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSstatsConvert")

 

HTML	R Script	Working with MSstatsConvert
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, MassSpectrometry, Proteomics, QualityControl, Software
Version	1.2.2
In Bioconductor since	BioC 3.12 (R-4.0) (1 year)
License	Artistic-2.0
Depends	R (>= 4.0)
Imports	data.table, log4r, methods, checkmate, utils, stringi
LinkingTo
Suggests	tinytest, covr, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	MSstats, MSstatsPTM, MSstatsTMT
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MSstatsConvert_1.2.2.tar.gz
Windows Binary	MSstatsConvert_1.2.2.zip
macOS 10.13 (High Sierra)	MSstatsConvert_1.2.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MSstatsConvert
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MSstatsConvert
Package Short Url	https://bioconductor.org/packages/MSstatsConvert/
Package Downloads Report	Download Stats