MACSr

DOI: 10.18129/B9.bioc.MACSr    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see MACSr.

MACS: Model-based Analysis for ChIP-Seq

Bioconductor version: 3.13

The Model-based Analysis of ChIP-Seq (MACS) is a widely used toolkit for identifying transcript factor binding sites. This package is an R wrapper of the lastest MACS3.

Author: Qiang Hu [aut, cre]

Maintainer: Qiang Hu <Qiang.Hu at roswellpark.org>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MACSr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MACSr")

 

HTML	R Script	MACSr
PDF		Reference Manual
Text		LICENSE

Details

biocViews	ATACSeq, ChIPSeq, ImmunoOncology, Software
Version	1.0.0
In Bioconductor since	BioC 3.13 (R-4.1) (< 6 months)
License	BSD_3_clause + file LICENSE
Depends	R (>= 4.1.0)
Imports	utils, reticulate, S4Vectors, methods, basilisk, ExperimentHub, AnnotationHub
LinkingTo
Suggests	testthat, knitr, rmarkdown, BiocStyle, MACSdata
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MACSr_1.0.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)	MACSr_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MACSr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MACSr
Package Short Url	https://bioconductor.org/packages/MACSr/
Package Downloads Report	Download Stats