LiquidAssociation

DOI: 10.18129/B9.bioc.LiquidAssociation    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see LiquidAssociation.

LiquidAssociation

Bioconductor version: 3.13

The package contains functions for calculate direct and model-based estimators for liquid association. It also provides functions for testing the existence of liquid association given a gene triplet data.

Author: Yen-Yi Ho <yho at jhsph.edu>

Maintainer: Yen-Yi Ho <yho at jhsph.edu>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LiquidAssociation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LiquidAssociation")

 

PDF	R Script	LiquidAssociation Vignette
PDF		Reference Manual

Details

biocViews	CellBiology, GeneExpression, Genetics, Network, Pathways, Software, TimeCourse
Version	1.46.0
In Bioconductor since	BioC 2.5 (R-2.10) (12 years)
License	GPL (>=3)
Depends	geepack, methods, yeastCC, org.Sc.sgd.db
Imports	Biobase, graphics, grDevices, methods, stats
LinkingTo
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Depends On Me	fastLiquidAssociation
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	LiquidAssociation_1.46.0.tar.gz
Windows Binary	LiquidAssociation_1.46.0.zip
macOS 10.13 (High Sierra)	LiquidAssociation_1.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/LiquidAssociation
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/LiquidAssociation
Package Short Url	https://bioconductor.org/packages/LiquidAssociation/
Package Downloads Report	Download Stats