Imetagene

DOI: 10.18129/B9.bioc.Imetagene    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Imetagene.

A graphical interface for the metagene package

Bioconductor version: 3.13

This package provide a graphical user interface to the metagene package. This will allow people with minimal R experience to easily complete metagene analysis.

Author: Audrey Lemacon <audrey.lemacon.1 at ulaval.ca>, Charles Joly Beauparlant <charles.joly-beauparlant at crchul.ulaval.ca>, Arnaud Droit <arnaud.droit at crchuq.ulaval.ca>

Maintainer: Audrey Lemacon <audrey.lemacon.1 at ulaval.ca>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Imetagene")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Alignment, ChIPSeq, Coverage, Genetics, MultipleComparison, Sequencing, Software
Version	1.22.0
In Bioconductor since	BioC 3.2 (R-3.2) (6 years)
License	Artistic-2.0 | file LICENSE
Depends	R (>= 3.2.0), metagene, shiny
Imports	d3heatmap, shinyBS, shinyFiles, shinythemes, ggplot2
LinkingTo
Suggests	knitr, BiocStyle, rmarkdown
SystemRequirements
Enhances
URL
BugReports	https://github.com/andronekomimi/Imetagene/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/Imetagene
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Imetagene
Package Short Url	https://bioconductor.org/packages/Imetagene/
Package Downloads Report	Download Stats