GeneticsPed

DOI: 10.18129/B9.bioc.GeneticsPed    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see GeneticsPed.

Pedigree and genetic relationship functions

Bioconductor version: 3.13

Classes and methods for handling pedigree data. It also includes functions to calculate genetic relationship measures as relationship and inbreeding coefficients and other utilities. Note that package is not yet stable. Use it with care!

Author: Gregor Gorjanc and David A. Henderson <DNADavenator at GMail.Com>, with code contributions by Brian Kinghorn and Andrew Percy (see file COPYING)

Maintainer: David Henderson <DNADavenator at GMail.Com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GeneticsPed")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneticsPed")

 

PDF	R Script	Calculation of genetic relatedness/relationship between individuals in the pedigree
PDF	R Script	Pedigree handling
PDF	R Script	Quantitative genetic (animal) model example in R
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Genetics, Software
Version	1.54.0
In Bioconductor since	BioC 2.0 (R-2.5) (14.5 years)
License	LGPL (>= 2.1) | file LICENSE
Depends	R (>= 2.4.0), MASS
Imports	gdata, genetics
LinkingTo
Suggests	RUnit, gtools
SystemRequirements
Enhances
URL	http://rgenetics.org
Depends On Me
Imports Me	LRQMM
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GeneticsPed_1.54.0.tar.gz
Windows Binary	GeneticsPed_1.54.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra)	GeneticsPed_1.54.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GeneticsPed
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GeneticsPed
Package Short Url	https://bioconductor.org/packages/GeneticsPed/
Package Downloads Report	Download Stats