EasyqpcR

DOI: 10.18129/B9.bioc.EasyqpcR    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see EasyqpcR.

EasyqpcR for low-throughput real-time quantitative PCR data analysis

Bioconductor version: 3.13

This package is based on the qBase algorithms published by Hellemans et al. in 2007. The EasyqpcR package allows you to import easily qPCR data files as described in the vignette. Thereafter, you can calculate amplification efficiencies, relative quantities and their standard errors, normalization factors based on the best reference genes choosen (using the SLqPCR package), and then the normalized relative quantities, the NRQs scaled to your control and their standard errors. This package has been created for low-throughput qPCR data analysis.

Author: Le Pape Sylvain

Maintainer: Le Pape Sylvain <sylvain.le.pape at univ-poitiers.fr>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EasyqpcR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	GeneExpression, Software, qPCR
Version	1.34.0
In Bioconductor since	BioC 2.11 (R-2.15) (9 years)
License	GPL (>=2)
Depends
Imports	plyr, matrixStats, plotrix, gWidgetsRGtk2
LinkingTo
Suggests	SLqPCR, qpcrNorm, qpcR, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/EasyqpcR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/EasyqpcR
Package Short Url	https://bioconductor.org/packages/EasyqpcR/
Package Downloads Report	Download Stats