DExMA

DOI: 10.18129/B9.bioc.DExMA    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see DExMA.

Differential Expression Meta-Analysis

Bioconductor version: 3.13

performing all the steps of gene expression meta-analysis without eliminating those genes that are presented in at least two datasets. It provides the necessary functions to be able to perform the different methods of gene expression meta-analysis. In addition, it contains functions to apply quality controls, download GEO data sets and show graphical representations of the results.

Author: Juan Antonio Villatoro-García [aut, cre], Pedro Carmona-Sáez [aut]

Maintainer: Juan Antonio Villatoro-García <juanantoniovillatorogarcia at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DExMA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DExMA")

 

PDF	R Script	Differential Expression Meta-Analysis with DExMA package
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GeneExpression, QualityControl, Software, StatisticalMethod
Version	1.0.2
In Bioconductor since	BioC 3.13 (R-4.1) (< 6 months)
License	GPL-2
Depends	R (>= 4.1), DExMAdata
Imports	Biobase, GEOquery, impute, limma, pheatmap, plyr, scales, snpStats, sva, swamp, stats, methods, utils
LinkingTo
Suggests	BiocStyle, qpdf, BiocGenerics, RUnit
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DExMA_1.0.2.tar.gz
Windows Binary	DExMA_1.0.2.zip (32- & 64-bit)
macOS 10.13 (High Sierra)	DExMA_1.0.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DExMA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DExMA
Package Short Url	https://bioconductor.org/packages/DExMA/
Package Downloads Report	Download Stats