CoRegFlux

DOI: 10.18129/B9.bioc.CoRegFlux    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CoRegFlux.

CoRegFlux

Bioconductor version: 3.13

CoRegFlux aims at providing tools to integrate reverse engineered gene regulatory networks and gene-expression into metabolic models to improve prediction of phenotypes, both for metabolic engineering, through transcription factor or gene (TF) knock-out or overexpression in various conditions as well as to improve our understanding of the interactions and cell inner-working.

Author: Pauline Trébulle, Daniel Trejo-Banos, Mohamed Elati

Maintainer: Pauline Trébulle and Mohamed Elati <coregflux at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CoRegFlux")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	GeneExpression, GenePrediction, GeneRegulation, Network, Software, SystemsBiology, Transcription
Version	1.8.0
In Bioconductor since	BioC 3.9 (R-3.6) (2.5 years)
License	GPL-3
Depends	R (>= 3.6)
Imports	CoRegNet, sybil
LinkingTo
Suggests	glpkAPI, testthat, knitr, rmarkdown, digest, R.cache, ggplot2, plyr, igraph, methods, latex2exp, rBayesianOptimization
SystemRequirements	GLPK (>= 4.42)
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/CoRegFlux
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CoRegFlux
Package Short Url	https://bioconductor.org/packages/CoRegFlux/
Package Downloads Report	Download Stats